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fastx_trimmer - FASTA/Q Trimmer


usage: fastx_trimmer [-h] [-f N] [-l N] [-t N] [-m MINLEN] [-z] [-v] [-i INFILE] [-o
OUTFILE] Part of FASTX Toolkit 0.0.14 by A. Gordon (assafgordon@gmail.com)

[-h] = This helpful help screen.

[-f N] = First base to keep. Default is 1 (=first base).

[-l N] = Last base to keep. Default is entire read.

[-t N] = Trim N nucleotides from the end of the read.

'-t' can not be used with '-l' and '-f'.

= With [-t], discard reads shorter than MINLEN.

[-z] = Compress output with GZIP.

= FASTA/Q input file. default is STDIN.

[-o OUTFILE] = FASTA/Q output file. default is STDOUT.

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