OnWorks favicon

fpromlke - Online in the Cloud

Run fpromlke in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command fpromlke that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



fpromlk - Protein phylogeny by maximum likelihood


fpromlk -sequence seqsetall -intreefile tree [-ncategories integer] -rate array
-categories properties [-weights properties] -lengths boolean [-model list]
[-gamma list] -gammacoefficient float -ngammacat integer -invarcoefficient float
-ninvarcat integer -invarfrac float -nhmmcategories integer -hmmrates array
-hmmprobabilities array -adjsite boolean -lambda float -njumble integer
-seed integer -global boolean [-outgrno integer] -outfile outfile [-trout toggle]
-outtreefile outfile [-printdata boolean] [-progress boolean] [-treeprint boolean]
[-hypstate boolean]

fpromlk -help


fpromlk is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Phylogeny:Molecular sequence" command group(s).


Input section
-sequence seqsetall
File containing one or more sequence alignments

-intreefile tree

-ncategories integer
Default value: 1

-rate array

-categories properties

-weights properties

Additional section
-lengths boolean
Default value: N

-model list
Default value: Jones-Taylor-Thornton

-gamma list
Default value: n

-gammacoefficient float
Default value: 1

-ngammacat integer
Default value: 1

-invarcoefficient float
Default value: 1

-ninvarcat integer
Default value: 1

-invarfrac float
Default value: 0.0

-nhmmcategories integer
Default value: 1

-hmmrates array
Default value: 1.0

-hmmprobabilities array
Default value: 1.0

-adjsite boolean
Default value: N

-lambda float
Default value: 1.0

-njumble integer

-seed integer
Default value: 1

-global boolean
Default value: N

-outgrno integer

Output section
-outfile outfile

-trout toggle
Default value: Y

-outtreefile outfile

-printdata boolean
Default value: N

-progress boolean
Default value: Y

-treeprint boolean
Default value: Y

-hypstate boolean
Default value: N

Use fpromlke online using onworks.net services

Free Servers & Workstations

Download Windows & Linux apps

  • 1
    OpenFOAM - The Open Source CFD Toolbox.
    OpenFOAM is a generic, programmable
    software tool for Computational Fluid
    Dynamics (CFD). For more information,
    see: - ...
    Download OpenFOAM
  • 2
    PostInstallerF will install all the
    software that Fedora Linux and others
    doesn't include by default, after
    running Fedora for the first time. Its
    easy for...
    Download PostInstallerF
  • 3
    The strace project has been moved to
    https://strace.io. strace is a
    diagnostic, debugging and instructional
    userspace tracer for Linux. It is used
    to monitor a...
    Download strace
  • 4
    JasperReports Library
    JasperReports Library
    JasperReports Library is the
    world's most popular open source
    business intelligence and reporting
    engine. It is entirely written in Java
    and it is able to ...
    Download JasperReports Library
  • 5
    Numerical Python
    Numerical Python
    NEWS: NumPy 1.11.2 is the last release
    that will be made on sourceforge. Wheels
    for Windows, Mac, and Linux as well as
    archived source distributions can be fou...
    Download Numerical Python
  • 6
    CMU Sphinx
    CMU Sphinx
    CMUSphinx is a speaker-independent large
    vocabulary continuous speech recognizer
    released under BSD style license. It is
    also a collection of open source tools ...
    Download CMU Sphinx
  • 7
    Old Feren OS Repositories
    Old Feren OS Repositories
    This was the Official Repository for
    Feren OS. To add the latest one, run
    this command: (16.04-based) echo
    "deb ...
    Download Old Feren OS Repositories
  • More »

Linux commands