EnglishFrenchSpanish

Ad


OnWorks favicon

hmmpress - Online in the Cloud

Run hmmpress in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command hmmpress that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


hmmpress - prepare an HMM database for hmmscan

SYNOPSIS


hmmpress [options] <hmmfile>

DESCRIPTION


Starting from a profile database <hmmfile> in standard HMMER3 format, construct binary
compressed datafiles for hmmscan. The hmmpress step is required for hmmscan to work.

Four files are created: <hmmfile>.h3m, <hmmfile>.h3i, <hmmfile>.h3f, and <hmmfile>.h3p.
The <hmmfile>.h3m file contains the profile HMMs and their annotation in a binary format.
The <hmmfile>.h3i file is an SSI index for the <hmmfile>.h3m file. The <hmmfile>.h3f file
contains precomputed data structures for the fast heuristic filter (the MSV filter). The
<hmmfile>.h3p file contains precomputed data structures for the rest of each profile.

<hmmfile> may not be '-' (dash); running hmmpress on a standard input stream rather than a
file is not allowed.

OPTIONS


-h Help; print a brief reminder of command line usage and all available options.

-f Force; overwrites any previous hmmpress'ed datafiles. The default is to bitch about
any existing files and ask you to delete them first.

Use hmmpress online using onworks.net services


Free Servers & Workstations

Download Windows & Linux apps

  • 1
    Zabbix
    Zabbix
    Zabbix is an enterprise-class open
    source distributed monitoring solution
    designed to monitor and track
    performance and availability of network
    servers, device...
    Download Zabbix
  • 2
    KDiff3
    KDiff3
    This repository is no longer maintained
    and is kept for archival purposes. See
    https://invent.kde.org/sdk/kdiff3 for
    the newest code and
    https://download.kde.o...
    Download KDiff3
  • 3
    USBLoaderGX
    USBLoaderGX
    USBLoaderGX is a GUI for
    Waninkoko's USB Loader, based on
    libwiigui. It allows listing and
    launching Wii games, Gamecube games and
    homebrew on Wii and WiiU...
    Download USBLoaderGX
  • 4
    Firebird
    Firebird
    Firebird RDBMS offers ANSI SQL features
    & runs on Linux, Windows &
    several Unix platforms. Features
    excellent concurrency & performance
    & power...
    Download Firebird
  • 5
    KompoZer
    KompoZer
    KompoZer is a wysiwyg HTML editor using
    the Mozilla Composer codebase. As
    Nvu's development has been stopped
    in 2005, KompoZer fixes many bugs and
    adds a f...
    Download KompoZer
  • 6
    Free Manga Downloader
    Free Manga Downloader
    The Free Manga Downloader (FMD) is an
    open source application written in
    Object-Pascal for managing and
    downloading manga from various websites.
    This is a mirr...
    Download Free Manga Downloader
  • More »

Linux commands

Ad