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ltrsift - Online in the Cloud

Run ltrsift in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command ltrsift that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


ltrsift - a graphical interface for postprocessing and classification of LTR
retrotransposon candidates

SYNOPSIS


ltrsift

DESCRIPTION


LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted
LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest.

CONFIGURATION


The LAST binaries (lastal and lastdb) should be located in the system search path. If they
are not, is it possible to specify their location using the “GT_LAST_PATH" environment
variable prior to running LTRsift. The same applies for the BLAST location. Use
``GT_BLAST_PATH” to specify the the full path to the “blastall” executable.

Style files (describing how the linear diagram of the candidate features look like) can be
set via the LTRSIFT_STYLE_FILE environment variable. A sensible default style is built
into LTRsift.

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