OnWorks favicon

maf2anchors.pl - Online in the Cloud

Run maf2anchors.pl in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command maf2anchors.pl that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



maf2anchors -- Converts maf files into Murasaki anchor sets


maf2anchors <file.maf>


use <S> as a prefix for output file names (otherwise uses <file.maf>)

allow up to <I> rifts.

generate fake sequence length files and sequence stubs based on sequence length data
in MAF file

trust the comment annotation added by TBA on the second line of the file (if present)
that it lists tree used in the alignment and all of the sequences involved. Defaults
to on. use --notrust to distrust TBA tags (technically this data isn't part of the
file format specification and is just crammed into comments that TBA produces, but
might not be present or accurate on all MAF files, thus we give you the option to
distrust it).

Sort the sequences found by --trust (so as to match the output that would have
happened with --notrust).

Use maf2anchors.pl online using onworks.net services

Free Servers & Workstations

Download Windows & Linux apps

  • 1
    Alt-F provides a free and open source
    alternative firmware for the DLINK
    DNS-320/320L/321/323/325/327L and
    DNR-322L. Alt-F has Samba and NFS;
    supports ext2/3/4...
    Download Alt-F
  • 2
    Usm is a unified slackware package
    manager that handles automatic
    dependency resolution. It unifies
    various package repositories including
    slackware, slacky, p...
    Download usm
  • 3
    Chart.js is a Javascript library that
    allows designers and developers to draw
    all kinds of charts using the HTML5
    canvas element. Chart js offers a great
    array ...
    Download Chart.js
  • 4
    iReport-Designer for JasperReports
    iReport-Designer for JasperReports
    NOTE: iReport/Jaspersoft Studio Support
    Announcement: As of version 5.5.0,
    Jaspersoft Studio will be the official
    design client for JasperReports. iReport
    Download iReport-Designer for JasperReports
  • 5
    PostInstallerF will install all the
    software that Fedora Linux and others
    doesn't include by default, after
    running Fedora for the first time. Its
    easy for...
    Download PostInstallerF
  • 6
    The strace project has been moved to
    https://strace.io. strace is a
    diagnostic, debugging and instructional
    userspace tracer for Linux. It is used
    to monitor a...
    Download strace
  • More »

Linux commands