This is the command mergere that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
merger - Merge two overlapping sequences
SYNOPSIS
merger -asequence sequence -bsequence sequence [-datafile matrixf] [-gapopen float]
[-gapextend float] -outfile align -outseq seqout
merger -help
DESCRIPTION
merger is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Consensus" command group(s).
OPTIONS
Input section
-asequence sequence
-bsequence sequence
-datafile matrixf
This is the scoring matrix file used when comparing sequences. By default it is the
file 'EBLOSUM62' (for proteins) or the file 'EDNAFULL' (for nucleic sequences). These
files are found in the 'data' directory of the EMBOSS installation.
Additional section
-gapopen float
Default value: @($(acdprotein)? 50.0 : 50.0 )
-gapextend float
Default value: @($(acdprotein)? 5.0 : 5.0)
Output section
-outfile align
-outseq seqout
Use mergere online using onworks.net services
