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mia-2dsegshiftperslice - Online in the Cloud

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This is the command mia-2dsegshiftperslice that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


mia-2dsegshiftperslice - Translate a segmentation by the given amount.

SYNOPSIS


mia-2dsegshiftperslice -i <in-file> -o <out-file> -S <shift> [options]

DESCRIPTION


mia-2dsegshiftperslice This program move the segmentation(s) of an image series by using a
shift that is given on a per-slice base. The program can be used to correct the
segmentation of the images if a linear registration was executed that only applies a
translation and does not correct the segmentation automatically.

OPTIONS


-i --in-file=(input, required); string
input segmentation set

-o --out-file=(output, required); string
output segmentation set

-g --image-file=crop
output image filename base

-S --shift=(required); string
shift of segmentation - base name

Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities.
Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors

--copyright
print copyright information

-h --help
print this help

-? --usage
print a short help

--version
print the version number and exit

Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower
or equal to the number of logical processor cores in the machine. (-1:
automatic estimation).Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical processor cores in
the machine. (-1: automatic estimation).

EXAMPLE


Shirt the segmentation given in set segment.set by files shiftXXXX.txt and store the
result in shifted.set. Note, the numbering of the shiftXXXX.txx files must coincide.

mia-2dsegshiftperslice -i segment.set -o shifted.set -g shifted -S shift

AUTHOR(s)


Gert Wollny

COPYRIGHT


This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes
with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU
GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
option '--copyright'.

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