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mia-2dseriescorr - Online in the Cloud

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This is the command mia-2dseriescorr that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


mia-2dseriescorr - Evaluate the time-intensity correlation in a series of images.

SYNOPSIS


mia-2dseriescorr -i <in-base> -o <outname> [options]

DESCRIPTION


mia-2dseriescorr Given a set of images of temporal sucession, evaluates images that
represent the time-intensity correlation in horizontal and vertical direction as well as
average correlation of each pixel with its neighbors. All input images must be of the same
pixel type and size.

OPTIONS


-i --in-base=(input, required); io
input file name base For supported file types see PLUGINS:2dimage/io

-o --outname=(output, required); io
output file name to save the avarage per-pixel correlation For supported
file types see PLUGINS:2dimage/io

-z --horizontal=(output); io
horiZontal correlation output file name For supported file types see
PLUGINS:2dimage/io

-t --vertical=(output); io
verTical correlation output file name For supported file types see
PLUGINS:2dimage/io

-k --skip=2
skip images at beginning of seriesskip images at beginning of series

-e --end=60
last image in serieslast image in series

Help & Info
-V --verbose=warning
verbosity of output, print messages of given level and higher priorities.
Supported priorities starting at lowest level are:
info ‐ Low level messages
trace ‐ Function call trace
fail ‐ Report test failures
warning ‐ Warnings
error ‐ Report errors
debug ‐ Debug output
message ‐ Normal messages
fatal ‐ Report only fatal errors

--copyright
print copyright information

-h --help
print this help

-? --usage
print a short help

--version
print the version number and exit

Processing
--threads=-1
Maxiumum number of threads to use for processing,This number should be lower
or equal to the number of logical processor cores in the machine. (-1:
automatic estimation).Maxiumum number of threads to use for processing,This
number should be lower or equal to the number of logical processor cores in
the machine. (-1: automatic estimation).

PLUGINS: 2dimage/io


bmp BMP 2D-image input/output support

Recognized file extensions: .BMP, .bmp

Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit

datapool Virtual IO to and from the internal data pool

Recognized file extensions: .@

dicom 2D image io for DICOM

Recognized file extensions: .DCM, .dcm

Supported element types:
signed 16 bit, unsigned 16 bit

exr a 2dimage io plugin for OpenEXR images

Recognized file extensions: .EXR, .exr

Supported element types:
unsigned 32 bit, floating point 32 bit

jpg a 2dimage io plugin for jpeg gray scale images

Recognized file extensions: .JPEG, .JPG, .jpeg, .jpg

Supported element types:
unsigned 8 bit

png a 2dimage io plugin for png images

Recognized file extensions: .PNG, .png

Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit

raw RAW 2D-image output support

Recognized file extensions: .RAW, .raw

Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit,
signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64
bit

tif TIFF 2D-image input/output support

Recognized file extensions: .TIF, .TIFF, .tif, .tiff

Supported element types:
binary data, unsigned 8 bit, unsigned 16 bit, unsigned 32 bit

vista a 2dimage io plugin for vista images

Recognized file extensions: .V, .VISTA, .v, .vista

Supported element types:
binary data, signed 8 bit, unsigned 8 bit, signed 16 bit, unsigned 16 bit,
signed 32 bit, unsigned 32 bit, floating point 32 bit, floating point 64
bit

EXAMPLE


Evaluate the time-intensity correaltions for an image series imageXXXX.png starting at
image 2 and stop at image 30. Store the results in horizontal.exr, and vertical.exr.

mia-2dseriescorr -i image0000.png -k 2 -e 30 -z horizontal.exr -t vertical.exr

AUTHOR(s)


Gert Wollny

COPYRIGHT


This software is Copyright (c) 1999‐2015 Leipzig, Germany and Madrid, Spain. It comes
with ABSOLUTELY NO WARRANTY and you may redistribute it under the terms of the GNU
GENERAL PUBLIC LICENSE Version 3 (or later). For more information run the program with the
option '--copyright'.

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