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This is the command mnc2nii that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


mnc2nii - convert a MINC format file to a NIfTI-1 or Analyze format file.

SYNOPSIS


mnc2nii [<options>] <infile.mnc> <outfile.mnc>

mnc2nii -help

DESCRIPTION


The mnc2nii command is used to convert MINC format files to either NIfTI-1 or Analyze
format. The NIfTI-1 format was developed by the members of the Neuroinformatics
Technology Initiative's Data Format Working Group (DFWG). The NIfTI-1 format is based
upon the Mayo Clinic's Analyze 7.5 format.

The name of the program is derived from the common filename suffixes used for NIfTI-1 and
MINC files. NIfTI-1 defines two possible formats, a "header plus raw image" 2-file
format, and a single-file format that includes both header information and the image data.
As with Analyze 7.5, the 2-file format consists of one file with the suffix ".hdr" and
another file with the extension ".img". In NIfTI-1 single-file format, the two files may
be combined into a single file with a ".nii" filename suffix.

In addition to the NIfTI-1 formats, mnc2nii can convert MINC files to the Analyze 7.5
format.

OPTIONS


Note that options can be specified in abbreviated form (as long as they are unique) and
can be given anywhere on the command line.

Output file format


-dual Save file in NIfTI-1 two-file format (.hdr and .img)

-ASCII Save file in non-standard NIfTI-1 ASCII file format

-nii Save file in NIfTI-1 single-file format (.nii)

-analyze
Save file in Analyze 7.5 compatible format

Output voxel format


-float Save voxels in 32-bit floating point format

-double
Save voxels in 64-bit floating point format

-byte Save voxels in 8-bit integer format

-short Save voxels in 16-bit integer format

-int Save voxels in 32-bit integer format

-signed
Save voxels in signed (2's complement) integer format

-unsigned
Save voxels in unsigned integer format

Other options


-noscanrange
Don't scan data to determine valid range.

-quiet Quiet operation - do not print progress or debugging information.

Generic options for all commands


-help Print summary of command-line options and abort

-version
Print the program and library versions and abort

KNOWN BUGS


Current handling of NIfTI-1 qform and sform coordinate transforms should probably be
revised as the NIfTI group clarifies the correct usage of these fields.

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