This is the command newcpgreporte that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
newcpgreport - Identify CpG islands in nucleotide sequence(s)
SYNOPSIS
newcpgreport -sequence seqall -window integer -shift integer -minlen integer -minoe float
-minpc float -outfile outfile
newcpgreport -help
DESCRIPTION
newcpgreport is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Nucleic:CpG Islands" command group(s).
OPTIONS
Input section
-sequence seqall
Required section
-window integer
Default value: 100
-shift integer
Default value: 1
-minlen integer
Default value: 200
-minoe float
Default value: 0.6
-minpc float
Default value: 50.
Output section
-outfile outfile
Use newcpgreporte online using onworks.net services
