This is the command randomFQ that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
randomFQ - ea-utils: return random entries from the input fastq
DESCRIPTION
Unknown option: h usage: ./randomFQ (-c <count> | -p <pct>) [-fasta] [-out <prefix>]
[-seed <int>] <input-fastq> [<input-2> [<index-3>] ]
Returns <count> number of random entries from the input fastq.
Output is fastq, unless you specify -fasta
If the -out parameter ends in .gz, the result is gzipped in-place.
-p returns a % of total reads, -c returns a fixed count.
SINGLE END:
Outputs to standard output, unless -out <file> is specified.
PAIRED END:
Pass 2 (or 3) files as input, -out is required.
If the paired-end output contains a "%" sign, it is replaced with the 1 & 2 for
paired-end.
IE: -o output_%.fastq.gz
Otherwise it's jsut output_1 and output_2
*** If one file is an indexed read, it has to be the 3rd file (for now).
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