This is the command tree-puzzle that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
tree-puzzle - Reconstruction of phylogenetic trees by maximum likelihood
SYNOPSIS
tree-puzzle
DESCRIPTION
This manual page documents briefly the tree-puzzle command. This manual page was written
for the Debian GNU/Linux distribution because the original program does not have a manual
page.
TREE-PUZZLE is the new name for the program previously known as PUZZLE!
tree-puzzle is an interactive console program that implements a fast tree search
algorithm, quartet puzzling, that allows analysis of large data sets and automatically
assigns estimations of support to each internal branch. TREE-PUZZLE also computes pairwise
maximum likelihood distances as well as branch lengths for user specified trees. Branch
lengths can also be calculated under the clock-assumption. In addition, TREE-PUZZLE offers
a novel method, likelihood mapping, to investigate the support of a hypothesized internal
branch without computing an overall tree and to visualize the phylogenetic content of a
sequence alignment.
There is also a paralellized version tree-ppuzzle available.
OPTIONS
There are no options. For usage please look at /usr/share/doc/tree-puzzle/tree-puzzle.pdf.
Use tree-puzzle online using onworks.net services
