This is the command wordmatche that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
wordmatch - Finds regions of identity (exact matches) of two sequences
SYNOPSIS
wordmatch -asequence seqset -bsequence seqall -wordsize integer [-dumpalign toggle]
-outfile align [-logfile outfile] [-dumpfeat toggle] -aoutfeat featout
-boutfeat featout
wordmatch -help
DESCRIPTION
wordmatch is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Alignment:Local" command group(s).
OPTIONS
Input section
-asequence seqset
-bsequence seqall
Required section
-wordsize integer
Default value: 4
Output section
-dumpalign toggle
Default value: Y
-outfile align
-logfile outfile
Statistics on distribution of kmers and matches Default value: wordmatch.log
-dumpfeat toggle
Default value: Y
-aoutfeat featout
-boutfeat featout
Use wordmatche online using onworks.net services
