EnglishFrenchSpanish

OnWorks favicon

BamBam download for Linux

Free download BamBam Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named BamBam whose latest release can be downloaded as bambam-1.4.tgz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named BamBam with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

BamBam


Ad


DESCRIPTION

BamBam includes numerous tools for analyzing DNA next-generation sequencing data. Tools are provided for calling SNPs and indels, identifying large scale deletions, tabulating counts of mapped reads, methylation analysis, and more.

Depends on SAMtools (http://samtools.sourceforge.net/) and BAMtools (https://github.com/pezmaster31/bamtools). Also uses BioPerl, which is included in the download tarball.



Features

  • call SNPs and indels
  • impute genotypes
  • build consensus sequences
  • tabulate counts of mapped reads (RNA-seq)
  • infer haplotype phasing with K-means clustering
  • analyze DNA methylation (bisulfite-sequencing)


Audience

Science/Research



Programming Language

Perl, C++


Categories

Bio-Informatics

This is an application that can also be fetched from https://sourceforge.net/projects/bambam/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


Ad


Ad