This is the Linux app named ConoSorter whose latest release can be downloaded as ConoSorter_v1.1.zip. It can be run online in the free hosting provider OnWorks for workstations.
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ConoSorter
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DESCRIPTION
ConoSorter is a high-throughput standalone program that implements regular expressions and profile Hidden Markov Models (pHMMs) for large-scale identification and classification of precursor conopeptides into gene superfamilies and classes based on the ER signal, pro-, and mature conopeptide regions generated from raw next-generation transcriptomic or proteomic data.
ConoSorter also generates a set of relevant additional information (frequency of protein sequences, length, number of cysteine residues, hydrophobicity rate of N-terminal region) and automatically searches ConoServer database to allow the user to assess the reliability and relevance of the results and to aid the identification of new conopeptide superfamilies and classes.
Features
- ConoSorter_v1.1 Update (2013-11-06): New Superfamilies (V. Lavergne et al., BMC Genomics - 2013; AH. Jin et al., MCP - 2013) and Class (C. Moeller et al., JBC - 2010).
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/conosorter/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
