This is the Linux app named DyMMM to run in Linux online whose latest release can be downloaded as DyMMM.1.3.1.zip. It can be run online in the free hosting provider OnWorks for workstations.
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DyMMM to run in Linux online
DESCRIPTION
The Dynamic Multispecies Metabolic Modeling (DyMMM [dĭm]) framework is a mathematical modeling tool that integrates multiple constraint-based metabolic models into a single dynamic community metabolic model. The DyMMM framework was formerly known as the DMMM framework.Please use the following citation for bibliographical purposes:
Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal.
Zhuang, K., Ma, E., Lovley, D. R., & Mahadevan, R. (2012). The design of long-term effective uranium bioremediation strategy using a community metabolic model. Biotechnology and Bioengineering.
Features
- dynamic community metabolic modeling
- cobra-toolbox integration
- matlab integration
Audience
Science/Research, Engineering
Programming Language
MATLAB
This is an application that can also be fetched from https://sourceforge.net/projects/dymmm/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
