This is the Linux app named GENIE (GEne-geNe IntEraction) whose latest release can be downloaded as GENIE_src.tar. It can be run online in the free hosting provider OnWorks for workstations.
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GENIE (GEne-geNe IntEraction)
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DESCRIPTION
Gene-gene interaction in genetic association studies is computationally intensive when a large number of SNPs are involved. Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic interaction analysis for binary traits.
Here we present a novel software package GENIE, which utilizes the power of multiple GPU or CPU processor cores to parallelize the interaction analysis.
Citation: Chikkagoudar, S., Wang, K., & Li, M. (2011). GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores. BMC research notes, 4(1), 158.
Audience
Science/Research
Programming Language
C
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/gpugenie/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
