EnglishFrenchSpanish

OnWorks favicon

GMcloser download for Linux

Free download GMcloser Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named GMcloser whose latest release can be downloaded as GMcloser-1.6.2.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named GMcloser with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

GMcloser


Ad


DESCRIPTION

GMcloser fills and closes the gaps present in scaffold assemblies, especially those generated by the de novo assembly of whole genomes with next-generation sequencing (NGS) reads. Unlike other gap-closing tools that use only NGS reads, GMcloser uses preassembled contig sets or long read sets as the sequences to close gaps and uses paired-end (PE) reads and a likelihood-based algorithm to improve the accuracy and efficiency of gap closure. The efficiency of gap closure can be increased by successive treatments with different contig sets.

An accompanied package, GMvalue, is a tool to determine misassembly sites in contigs and scaffolds. Unlike other related tools, GMvalue can define misassembly categories with several options, and can be applied to assemblies of a large size genome. By using the -e option, GMvalue also generates error-free assemblies by splitting or correcting misassembles.



This is an application that can also be fetched from https://sourceforge.net/projects/gmcloser/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.


Ad


Ad