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Free download Power Decoder to run in Linux online Linux app to run online in Ubuntu online, Fedora online or Debian online

This is the Linux app named Power Decoder to run in Linux online whose latest release can be downloaded as PowerDecoder-1.0.0.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.

Download and run online this app named Power Decoder to run in Linux online with OnWorks for free.

Follow these instructions in order to run this app:

- 1. Downloaded this application in your PC.

- 2. Enter in our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 3. Upload this application in such filemanager.

- 4. Start the OnWorks Linux online or Windows online emulator or MACOS online emulator from this website.

- 5. From the OnWorks Linux OS you have just started, goto our file manager https://www.onworks.net/myfiles.php?username=XXXXX with the username that you want.

- 6. Download the application, install it and run it.

Power Decoder to run in Linux online


DESCRIPTION:

RNA interference (RNAi) screening using pooled, short hairpin (sh)RNA is a powerful, high-throughput tool for determining the biological relevance of genes for a phenotype. Assessing an shRNA pooled screen’s performance is difficult in practice; one can estimate the performance only by using reproducibility as a proxy for power or by employing a large number of validated positive and negative controls. Here, we develop an open-source software tool, the Power Decoder simulator, for generating shRNA pooled screening experiments in silico that can be used to estimate a screen’s statistical power. Using the negative binomial distribution, it models both the relative abundance of multiple shRNAs within a single screening replicate and the biological noise between replicates for each individual shRNA. The Power Decoder simulator is written in R and Python.


User interface

Console/Terminal


This is an application that can also be fetched from https://sourceforge.net/projects/powerdecoder/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.

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