This is the Linux app named AlphaGenome whose latest release can be downloaded as v0.0.1sourcecode.tar.gz. It can be run online in the free hosting provider OnWorks for workstations.
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AlphaGenome
DESCRIPTION
The AlphaGenome API provides access to AlphaGenome, Google DeepMind’s unifying model for deciphering the regulatory code within DNA sequences. This repository contains client-side code, examples, and documentation to help you use the AlphaGenome API. AlphaGenome offers multimodal predictions, encompassing diverse functional outputs such as gene expression, splicing patterns, chromatin features, and contact maps. The model analyzes DNA sequences of up to 1 million base pairs in length and can deliver predictions at single-base-pair resolution for most outputs. AlphaGenome achieves state-of-the-art performance across a range of genomic prediction benchmarks, including numerous diverse variant effect prediction tasks.
Features
- You can get started by getting an API key
- The tutorials walk through example usage of the AlphaGenome model
- Install alphagenome locally
- Examples available
- Documentation available
- AlphaGenome offers multimodal predictions
Programming Language
Python
Categories
This is an application that can also be fetched from https://sourceforge.net/projects/alphagenome.mirror/. It has been hosted in OnWorks in order to be run online in an easiest way from one of our free Operative Systems.
