This is the command analyze-pat.pl that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
analyze-pat.pl -- analyzes a pattern
analyze-pat.pl <pattern | file-containing pattern>
--verbose|-v => More verbose output to stdout. Can be applied multiple times.
--matrix => Where to find the scoring matrix.
Use analyze-pat.pl online using onworks.net services