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asn2ff - Online in the Cloud

Run asn2ff in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command asn2ff that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


asn2ff - convert ASN.1 biological data to a flat format (old version)

SYNOPSIS


asn2ff [-] [-A X] [-B X] [-C] [-G] [-L F] [-M] [-R] [-V F] [-a filename] [-b] [-d] [-e]
[-f b/p/e/s/x/z] [-g] [-h F] [-k F] [-l filename] [-m r/d/s/c/k/l/e/p] [-n F]
[-o filename] [-p F] [-q] [-r filename] [-s] [-t] [-v F] [-w] [-y] [-z]

DESCRIPTION


asn2ff converts descriptions of biological sequences from NCBI's ASN.1 format to one of
several flat-file formats. This program is built around a deprecated interface; please
use asn2gb(1) instead.

OPTIONS


A summary of options is included below.

- Print usage message

-A X Show region starting at X (default is 0)

-B X Show region ending at X (default is last position)

-C Show Bankit comments

-G Output is one top bioseq only in genome view

-L F Use old (pre-Genbank 127.0) LOCUS line format

-M Output is map bioseqs only

-R For GenBank Release

-V F Don't use VERSION

-a filename
Filename for ASN.1 input (default is stdin)

-b Input asnfile in binary mode

-d Use SeqMgr indexing

-e Input is a Seq-entry

-f b/p/e/s/x/z
Output Format:
b GenBank (default)
p GenPept
e EMBL
s PseudoEMBL
x GenBankSelect
z EMBLPEPT

-g Show gi numbers

-h F Hide sequence

-k F Don't use complex sets (phy-set,mut-set, pop-set)

-l filename
Log errors to filename

-m r/d/s/c/k/l/e/p
Output mode:
r release (default)
d dump
s Sequin
c Chromoscope
k dir-sub-debug
l dir-sub
e revise
p partial report

-n F Strict gene_binding

-o filename
Output Filename (default is stdout)

-p F Omit new gene features

-q Output is one top bioseq only

-r filename
Output error logfile (default is stderr)

-s Input is a Seq-submit

-t Show verbose message text

-v F Suppress error messages

-w Use HTML output format

-y Print help format only

-z New algorithm for orgnames

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