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asn2idx - Online in the Cloud

Run asn2idx in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command asn2idx that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


asn2idx - index ASN.1 Bioseq-sets for fast access to individual sequences

SYNOPSIS


asn2idx [-] [-b] [-d dir] [-f filter] -p path [-r path] [-t] [-x str]

DESCRIPTION


asn2idx indexes ASN.1 Bioseq-sets (such as GenBank release files) to speed retrieval of
the individual sequences they contain. For each file that it processes, it yields an
output file in the same directory with the extension .idx.

OPTIONS


A summary of options is included below.

- Print usage message

-b Bioseq-sets are Binary

-d dir Required Subdirectory

-f filter
Filter (default = gbcon,gbest,gbgss,gbhtg,gbsts)

-p path
Path to Files

-p path
Path for Results

-t Recurse

-x str File Selection Substring (default = .aso)

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