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bam2fastx - Online in the Cloud

Run bam2fastx in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command bam2fastx that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bam2fastx - tophat component converting bam directly into fastx

SYNOPSIS


bam2fastx [--fasta|-a|--fastq|-q] [--color] [-Q] [--sam|-s|-t]

DESCRIPTION


[-M|--mapped-only|-A|--all] [-o <outfile>] [-P|--paired] [-N] <in.bam>

Note: By default, reads flagged as not passing quality controls are

discarded; the -Q option can be used to ignore the QC flag.

Use the -N option if the /1 and /2 suffixes should be appended to

read names according to the SAM flags

Use the -O option to ignore the OQ tag, if present, when writing quality values

Use bam2fastx online using onworks.net services


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