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barrnap - Online in the Cloud

Run barrnap in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command barrnap that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


barrnap - rapid ribosomal RNA prediction

SYNOPSIS


barrnap [options] <chromosomes.fasta>

DESCRIPTION


Barrnap predicts the location of ribosomal RNA genes in genomes. It supports bacteria
(5S,23S,16S), archaea (5S,5.8S,23S,16S), mitochondria (12S,16S) and eukaryotes
(5S,5.8S,28S,18S).

OPTIONS


--help This help

--version
Print version and exit

--citation
Print citation for referencing barrnap

--kingdom [X]
Kingdom: mito bac arc euk (default 'bac')

--quiet
No screen output (default OFF)

--threads [N]
Number of threads/cores/CPUs to use (default '8')

--lencutoff [n.n] Proportional length threshold to label as partial (default '0.8')

--reject [n.n]
Proportional length threshold to reject prediction (default '0.5')

--evalue [n.n]
Similarity e-value cut-off (default '1e-09')

--incseq
Include FASTA input sequences in GFF3 output (default OFF)

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