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bowtie-inspect-debug - Online in the Cloud

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This is the command bowtie-inspect-debug that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bowtie-inspect - extracts information from a bowtie index

SYNOPSIS


bowtie-inspect [options]* <ebwt_base>

DESCRIPTION


<ebwt_base>
ebwt filename minus trailing .1.ebwt/.2.ebwt

By default, prints FASTA records of the indexed nucleotide sequences to standard
out. With -n, just prints names. With -s, just prints a summary of the index
parameters and sequences. With -e, preserves colors if applicable.

OPTIONS


--large-index
force inspection of the 'large' index, even if a 'small' one is present.

-a/--across <int>
Number of characters across in FASTA output (default: 60)

-n/--names
Print reference sequence names only

-s/--summary
Print summary incl. ref names, lengths, index properties

-e/--ebwt-ref
Reconstruct reference from ebwt (slow, preserves colors)

-v/--verbose
Verbose output (for debugging)

-h/--help
print detailed description of tool and its options

--help print this usage message

64-bit Built on lgw01-11 Thu Nov 26 11:13:31 UTC 2015 Compiler: gcc version 5.2.1 20151123
(Ubuntu 5.2.1-25ubuntu1) Options: -O3 -Wl,--hash-style=both -D_FORTIFY_SOURCE=2 -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro Sizeof {int, long,
long long, void*, size_t, off_t}: {4, 8, 8, 8, 8, 8}

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