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This is the command bp_gccalcp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bp_gccalc - GC content of nucleotide sequences

SYNOPSIS


bp_gccalc [-f/--format FORMAT] [-h/--help] filename
or
bp_gccalc [-f/--format FORMAT] < filename
or
bp_gccalc [-f/--format FORMAT] -i filename

DESCRIPTION


This scripts prints out the GC content for every nucleotide sequence from the input file.

OPTIONS


The default sequence format is fasta.

The sequence input can be provided using any of the three methods:

unnamed argument
bp_gccalc filename

named argument
bp_gccalc -i filename

standard input
bp_gccalc < filename

FEEDBACK


Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send
your comments and suggestions preferably to the Bioperl mailing list. Your participation
is much appreciated.

[email protected] - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists

Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
resolution. Bug reports can be submitted via the web:

https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich


Email [email protected]

HISTORY


Based on script code (see bottom) submitted by [email protected]

Submitted as part of bioperl script project 2001/08/06

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