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bp_heterogeneity_test - a test for distinguishing between selection and population


heterogenetity_test -mut_1/--mutsyn synonymous_mut_count -mut_2/--mutnon nonsyn_mut_count
-s/--smaplesize sample_size [-i/--iterations iterations] [-o/--observed observed_D]
[-v/--verbose] [--silent ] [-m/--method tajimaD or fuD] [--precision]

This is an implementation of the Heterogenetity test as described in Hahn MW, Rausher MD,
and Cunningham CW. 2002. Genetics 161(1):11-20.

Options in brackets above are optional

-s or --samplesize samplesize
-mut_1 or --mutsyn synonymous mutation count
-mut_2 or --mutnon nonsynonmous mutation count
-i or --iterations number of iterations
-o or --observed observed D
-m or --method tajimaD or fuD for Tajima's D or Fu and Li's D
-v or --verbose print out extra verbose messages
--silent Be extra quiet
--precision Level of precision - specify the number of digits
(default 4)

AUTHOR Matthew Hahn <matthew.hahn-at-duke.edu>
For more information contact:

Matthew Hahn, <matthew.hahn-at-duke.edu> Jason Stajich <jason-at-bioperl-dot-org>

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