This is the command bp_multi_hmmsearch.plp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
multi_hmmsearch - perform a hmmsearch into multiple FASTA files using
an INDEX file
multi_hmmsearch -p hmm_file [-i] -f index_file
Not technically a Bio::Tools::Run script as this doesn't use any Bioperl or Bioperl-run
components but it's useful.
-p HMM profile to use for the search.
-f INDEX file that contains a list of FASTA files for the multiple
-i Create a new index file with the resulting hmms files. This is
useful if you want to pass this list as input arguments into
-h Show this documentation.
User feedback is an integral part of the evolution of this and other Bioperl modules. Send
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is much appreciated.
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Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their
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