This is the command bp_process_sgdp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
bp_process_sgd.pl - Massage SGD annotation flat files into a version suitable for the
Generic Genome Browser
SYNOPSIS
% bp_process_sgd.pl chromosomal_features.tab > yeast.gff
DESCRIPTION
This script massages the SGD sequence annotation flat files located at
ftp://genome-ftp.stanford.edu/pub/yeast/data_dump/feature/chromosomal_features.tab into a
version of the GFF format suitable for display by the generic genome browser.
To use this script, get the SGD chromosomal_features.tab file from the FTP site listed
above, and run the following command:
% bp_process_sgd.pl chromosomal_features.tab > yeast.gff
The yeast.gff file can then be loaded into a Bio::DB::GFF database using the following
command:
% bulk_load_gff.pl -d <databasename> yeast.gff
Use bp_process_sgdp online using onworks.net services
