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bp_seqpartp - Online in the Cloud

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This is the command bp_seqpartp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bp_seqpart.pl - Takes one or more sequence files and splits them into a number of load
balanced files.

USAGE


bp_seqpart.pl -n <NUM_PARTS> [-h, -p <PREFIX>, -f <FORMAT>, -o <OUT_DIR>] <FILES...>

-n number of files to create through partitioning
-h this help message
-p prefix for all FASTA file names output, files are of the form <outdir>/<prefix>#.<format>
-f format of the files, defaults to FASTA but you can specify anything supported by SeqIO from BioPerl
-o output directory where to dump the split sequence files

DESCRIPTION


Script wrapping SeqIO that allows partitioning of multiple sequence files into near equal
sized parts for later parallel processing. Even if you have 10 input files outputting to
10 files will balance the files to contain similar total length of sequence. ID's are
ignored when deciding on how to balance each sequence.

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