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bp_seqretp - Online in the Cloud

Run bp_seqretp in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command bp_seqretp that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


bp_seqret - bioperl implementation of sequence fetch from local db (like EMBOSS seqret)

USAGE


bp_seqret [-f/--format outputformat] [-o/--out/--outfile outfile] [-d/--db dbname]
[-i/--id/-s/--seqname seqname1]

Example usage:

bp_seqret -f fasta -db db.fa -i seq1 -i seq2 > output.fas
bp_seqret db.fa:seq1 output.fas
bp_seqret db.fa:seq1 -o output.fas
bp_seqret -db db.fa -o output.fas seq1 seq2 seq3
bp_seqret -db db.fa seq1 seq2 seq3 output.fas
bp_seqret -db db.fa seq1 seq2 seq3 - > output.fas

The DB is expected to be a Fasta formatted sequence file with multiple sequences.

Output format is Fasta by default.

If no output filename is provided then output is written to STDOUT. Providing '-' as the
output filename will accomplish the same thing.

Use bp_seqretp online using onworks.net services


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