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cirdnae - Online in the Cloud

Run cirdnae in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command cirdnae that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


cirdna - Draws circular maps of DNA constructs

SYNOPSIS


cirdna -infile infile [-maxgroups integer] [-maxlabels integer] -ruler boolean
-blocktype list [-originangle float] -posticks selection -posblocks selection
[-intersymbol boolean] [-intercolour integer] [-interticks boolean]
[-gapsize integer] [-ticklines boolean] [-textheight float] [-textlength float]
[-tickheight float] [-blockheight float] [-rangeheight float] [-gapgroup float]
[-postext float] -graphout graph

cirdna -help

DESCRIPTION


cirdna is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Display" command group(s).

OPTIONS


Input section
-infile infile
Default value: inputfile

Additional section
-maxgroups integer
Default value: 20

-maxlabels integer
Default value: 10000

Output section
-ruler boolean
Default value: Y

-blocktype list
Default value: Filled

-originangle float
Default value: 90

-posticks selection
Default value: Out

-posblocks selection
Default value: In

-intersymbol boolean
Default value: Y

-intercolour integer
Default value: 1

-interticks boolean
Default value: N

-gapsize integer
Default value: 500

-ticklines boolean
Default value: N

-textheight float
Height of text. Enter a number <1.0 or >1.0 to decrease or increase the size,
respectively Default value: 1.0

-textlength float
Length of text. Enter a number <1.0 or >1.0 to decrease or increase the size,
respectively Default value: 1.0

-tickheight float
Height of ticks. Enter a number <1.0 or >1.0 to decrease or increase the size,
respectively Default value: 1.0

-blockheight float
Height of blocks. Enter a number <1.0 or >1.0 to decrease or increase the size,
respectively Default value: 1.0

-rangeheight float
Height of range ends. Enter a number <1.0 or >1.0 to decrease or increase the size,
respectively Default value: 1.0

-gapgroup float
Space between groups. Enter a number <1.0 or >1.0 to decrease or increase the size,
respectively Default value: 1.0

-postext float
Space between text and ticks, blocks, and ranges. Enter a number <1.0 or >1.0 to
decrease or increase the size, respectively Default value: 1.0

-graphout graph

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