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clustalx - Online in the Cloud

Run clustalx in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command clustalx that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



clustalw - a multiple sequence alignment program


clustalw [options]


This manual page documents briefly the clustalx command. This manual page was written for
the Debian GNU/Linux distribution because the original program does not have a manual
page. Instead, it has other documentation; see below.

clustalx is a windows interface for the ClustalW multiple sequence alignment program. It
provides an integrated environment for performing multiple sequence and profile alignments
and analysing the results. The sequence alignment is displayed in a window on the screen.
A versatile coloring scheme has been incorporated allowing you to highlight conserved
features in the alignment. The pull-down menus at the top of the window allow you to
select all the options required for traditional multiple sequence and profile alignment.

You can cut-and-paste sequences to change the order of the alignment; you can select a
subset of sequences to be aligned; you can select a sub-range of the alignment to be
realigned and inserted back into the original alignment.

Alignment quality analysis can be performed and low-scoring segments or exceptional
residues can be highlighted.

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