cmtk-avg_adm - Online in the Cloud

PROGRAM:

NAME

avg_adm - Average using ADM

SYNOPSIS

avg_adm [options] list0 [list1 ...]

DESCRIPTION

Compute average-shape average-intensity images and deformation maps using an active
deformation model.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--label, -l
Label mode (as opposed to grey)

--set-padding <float>
Set padding value in input files [Default: disabled]

--replace-padding <float>
Replace padding value in input files [Default: disabled]

--pad-out <double>, -p <double>
Padding value for output file [Default: disabled]

--jacobian, -j
Average Jacobian determinants of deformations.

--auto-scale, -a
Auto-scale image intensities

--char
Output is 8 bits, signed [default: automatic]

--byte
Output is 8 bits, unsigned

--short
Output is 16 bits, signed

--ushort
Output is 16 bits, unsigned

--int
Output is 32 bits signed

--float
Output is 32 bits floating point

--double
Output is 64 bits floating point

--no-scale-model, -S
Exclude scale from statistical deformation model

--no-ref-model, -R
Exclude reference coordinate frame from deformation model

--no-ref-data, -r
Exclude reference data from averaging

--output <string>, -o <string>
Output file name [FORMAT:]path [Default: NONE]

--input-warp <string>, -I <string>
Input file name for average warp [Default: NONE]

--output-warp <string>, -O <string>
Output file name for average warp [Default: NONE]

--with-affine, -A
Include affine component of first warp in output

--nn Use nearest neigbor interpolation

--cubic
Use tri-cubic interpolation

--replace-from <string>
Replace from pattern

--replace-to <string>
Replace to pattern

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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