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avg_adm - Average using ADM


avg_adm [options] list0 [list1 ...]


Compute average-shape average-intensity images and deformation maps using an active
deformation model.


Global Toolkit Options (these are shared by all CMTK tools)
Write list of basic command line options to standard output.

Write complete list of basic and advanced command line options to standard output.

Write list of command line options to standard output in MediaWiki markup.

Write man page source in 'nroff' markup to standard output.

Write toolkit version to standard output.

Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--label, -l
Label mode (as opposed to grey)

--set-padding <float>
Set padding value in input files [Default: disabled]

--replace-padding <float>
Replace padding value in input files [Default: disabled]

--pad-out <double>, -p <double>
Padding value for output file [Default: disabled]

--jacobian, -j
Average Jacobian determinants of deformations.

--auto-scale, -a
Auto-scale image intensities

Output is 8 bits, signed [default: automatic]

Output is 8 bits, unsigned

Output is 16 bits, signed

Output is 16 bits, unsigned

Output is 32 bits signed

Output is 32 bits floating point

Output is 64 bits floating point

--no-scale-model, -S
Exclude scale from statistical deformation model

--no-ref-model, -R
Exclude reference coordinate frame from deformation model

--no-ref-data, -r
Exclude reference data from averaging

--output <string>, -o <string>
Output file name [FORMAT:]path [Default: NONE]

--input-warp <string>, -I <string>
Input file name for average warp [Default: NONE]

--output-warp <string>, -O <string>
Output file name for average warp [Default: NONE]

--with-affine, -A
Include affine component of first warp in output

--nn Use nearest neigbor interpolation

Use tri-cubic interpolation

--replace-from <string>
Replace from pattern

--replace-to <string>
Replace to pattern


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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