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PROGRAM:

NAME


mk_nifti_hdr - Make NIFTI header file

SYNOPSIS


mk_nifti_hdr [options] [output.nii]

DESCRIPTION


Make header file according to NIFTI file format based on user-supplied parameters for
geometry, data type, orientation, etc.

OPTIONS


Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--dims <string>, -D <string>
Set dimensions in voxels. Provided as 'DimsX,DimsY,DimsZ'

--voxel <string>, -V <string>
Set voxel size. Provided as 'PixX,PixY,PixZ' [in mm]

--offset <float>, -O <float>
Binary data file offset [Default: disabled]

--byte, -b
8 bits, unsigned (this is the default)

--char, -c
8 bits, signed

--short, -s
16 bits, signed

--ushort, -u
16 bits, unsigned

--int, -i
32 bits signed

--float, -f
32 bits floating point

--double, -d
64 bits floating point

--reset-coordinates
In an imported header, reset the image-to-physical coordinate mapping to an identity
matrix.

--attached
Create attached header for use in single-file images. Image data must be concatenated
directly onto the created header file.

--import <string>, -I <string>
Import data from given header file. [Default: NONE]

--description <string>
Set description string [max. 80 characters] [Default: NONE]

AUTHORS


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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