cmtk-mk_analyze_hdr - Online in the Cloud

PROGRAM:

NAME

mk_analyze_hdr - Make Analyze header file

SYNOPSIS

mk_analyze_hdr [options] [output.nii]

DESCRIPTION

Make header file according Analzye 7.5 format based on user-supplied parameters for
geometry, data type, orientation, etc.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--dims <string>, -D <string>
Set dimensions in voxels

--voxel <string>, -V <string>
Set voxel size in [mm]

--offset <float>, -O <float>
Binary data file offset [Default: disabled]

--byte, -b
8 bits, unsigned (this is the default)

--char, -c
8 bits, signed

--short, -s
16 bits, signed

--ushort, -u
16 bits, unsigned

--int, -i
32 bits signed

--float, -f
32 bits floating point

--double, -d
64 bits floating point

--big-endian, -B
Big endian data [This is the default]

--little-endian, -L
Little endian data

--axial
Set slice orientation to axial (this is the default)

--axial-flip
Set slice orientation to reverse axial

--sagittal
Set slice orientation to sagittal

--sagittal-flip
Set slice orientation to reverse sagittal

--coronal
Set slice orientation to corona;

--coronal-flip
Set slice orientation to reverse coronal

--legacy
Legacy mode; do not write 'SRI1' tag into header

--SRI1
Force 'SRI1' tag even if not present in imported header

--import <string>, -I <string>
Import data from given header file. [Default: NONE]

--description <string>
Set description string [max. 80 characters] [Default: NONE]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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