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mk_analyze_hdr - Make Analyze header file


mk_analyze_hdr [options] [output.nii]


Make header file according Analzye 7.5 format based on user-supplied parameters for
geometry, data type, orientation, etc.


Global Toolkit Options (these are shared by all CMTK tools)
Write list of basic command line options to standard output.

Write complete list of basic and advanced command line options to standard output.

Write list of command line options to standard output in MediaWiki markup.

Write man page source in 'nroff' markup to standard output.

Write toolkit version to standard output.

Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options
--dims <string>, -D <string>
Set dimensions in voxels

--voxel <string>, -V <string>
Set voxel size in [mm]

--offset <float>, -O <float>
Binary data file offset [Default: disabled]

--byte, -b
8 bits, unsigned (this is the default)

--char, -c
8 bits, signed

--short, -s
16 bits, signed

--ushort, -u
16 bits, unsigned

--int, -i
32 bits signed

--float, -f
32 bits floating point

--double, -d
64 bits floating point

--big-endian, -B
Big endian data [This is the default]

--little-endian, -L
Little endian data

Set slice orientation to axial (this is the default)

Set slice orientation to reverse axial

Set slice orientation to sagittal

Set slice orientation to reverse sagittal

Set slice orientation to corona;

Set slice orientation to reverse coronal

Legacy mode; do not write 'SRI1' tag into header

Force 'SRI1' tag even if not present in imported header

--import <string>, -I <string>
Import data from given header file. [Default: NONE]

--description <string>
Set description string [max. 80 characters] [Default: NONE]


Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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