cmtk-sbai - Online in the Cloud

PROGRAM:

NAME

sbai - Shape-Based Averaging and interpolation of label images

SYNOPSIS

sbai InputImageVector

DESCRIPTION

Average segmentations (label fields) using the Euclidean Distance Transform. This tool
performs joint interpolation and averaging by interpolating from the EDT. This requires
that the inputs are transformations from the same fixed to (not necessarily) different
moving images. EDT computation is done in the space of each moving image. See
http://dx.doi.org/10.1109/TIP.2006.884936 for details of the underlying algorithm.

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.

--help-all
Write complete list of basic and advanced command line options to standard output.

--wiki
Write list of command line options to standard output in MediaWiki markup.

--man
Write man page source in 'nroff' markup to standard output.

--version
Write toolkit version to standard output.

--echo
Write the current command line to standard output.

--verbose-level <integer>
Set verbosity level.

--verbose, -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).

--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).

Input Options
--num-labels <integer>, -n <integer>
Number of labels. It is assumed that only values [0..num] occur in the images
[Default: 0]

--padding <float>, -p <float>
Padding value in input image [Default: disabled]

--replace-from <string>
Replace from pattern

--replace-to <string>
Replace to pattern

Output Options
--output <string>, -o <string>
File name for output segmentation file. [Default: sbai.nii ]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R.
Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

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