OnWorks favicon

createChemistryHeader - Online in the Cloud

Run createChemistryHeader in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command createChemistryHeader that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



createChemistryHeader.py - Create a SAM header with PacBio sequencing chemistry


usage: getChemistryHeader.py [-h] [--debug] --bas_files BAS_FILES

input_alignment_file output_header_file

createChemistryHeader creates a SAM header that contains the chemistry information used by

positional arguments:
A SAM or BAM file produced by BLASR.

Name of the SAM or BAM header file that will be created with chemistry information

optional arguments:
-h, --help
show this help message and exit

Output detailed log information. (default: False)

--bas_files BAS_FILES [BAS_FILES ...]
The bas or bax files containing the reads that were aligned in the
input_alignment_file. Also can be a fofn of bas or bax files. (default: None)

Use createChemistryHeader online using onworks.net services

Free Servers & Workstations

Download Windows & Linux apps

  • 1
    A fast tunnel proxy that helps you
    bypass firewalls This is an application
    that can also be fetched from
    It ha...
    Download Shadowsocks
  • 2
    GLPI Themes
    GLPI Themes
    Download release at
    Color themes for GLPI 0.84 and 0.85 New
    Modifications for GLPI This is an
    application that c...
    Download GLPI Themes
  • 3
    SMPlayer is a free media player for
    Windows and Linux with built-in codecs
    that can also play YouTube videos. One
    of the most interesting features of
    Download SMPlayer
  • 4
    AAX to MP3
    AAX to MP3
    Usage: - Install the Audible Manager
    and open a file of your account. - Sign
    in into your audible account (in the
    application). Now the program can
    convert you...
    Download AAX to MP3
  • 5
    TestLink is a web based Test Management
    tool. The application provides Test
    specification, Test plans and execution,
    Reporting, Requirements specification
    and ...
    Download TestLink
  • 6
    XDXF - XML Dictionary Exchange Format
    XDXF - XML Dictionary Exchange Format
    XDXF is a project to unite all existing
    open dictionaries and provide both users
    and developers with universal XML-based
    format, convertible from and to other ...
    Download XDXF - XML Dictionary Exchange Format
  • 7
    Transmission Remote GUI
    Transmission Remote GUI
    Transmission Remote GUI is a feature
    rich cross platform front-end to
    remotely control a Transmission
    Bit-Torrent client daemon via its RPC
    protocol. Transmissi...
    Download Transmission Remote GUI
  • More »

Linux commands