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PROGRAM:

NAME


csg_map - Part of the VOTCA package

SYNOPSIS


csg_map [OPTION] [OPTIONPARAMETERS]

DESCRIPTION


Map a reference trajectory to a coarse-grained trajectory. This program can be used to
map a whole trajectory or to create an initial configuration for a coarse-grained run
only.

Please visit the program site at __http://www.votca.org__.

OPTIONS


Allowed options:

-h [ --help ]
produce this help message

--top arg
atomistic topology file

--out arg
output file for coarse-grained trajectory

Mapping options:

--cg arg
coarse graining mapping definitions (xml-file)

--map-ignore arg
list of molecules to ignore separated by ;

--no-map
disable mapping and act on original trajectory

Trajectory options:

--trj arg
atomistic trajectory file

--begin arg (=0)
skip frames before this time

--first-frame arg (=0)
start with this frame

--nframes arg
process the given number of frames

AUTHORS


Written and maintained by the VOTCA Development Team <[email protected]>

This Manual Page was converted from t2t format to the this format by txt2tags
(http://txt2tags.org) ! The t2t file was extracted from 'csg_map --help' by help2t2t
(version 1.2.4 )

COPYRIGHT


Copyright 2009-2011 The VOTCA Development Team (http://www.votca.org)

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file
except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the
License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,
either express or implied. See the License for the specific language governing
permissions and limitations under the License.

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