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dba - Online in the Cloud

Run dba in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command dba that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


dba — characterising shared regulatory regions of genomic DNA

SYNOPSIS


dba [options ... ] { seq1 seq2 }

DESCRIPTION


dba - standing for Dna Block Aligner, was developped by Niclas Jareborg, Richard Durbin
and Ewan Birney for characterising shared regulatory regions of genomic DNA, either in
upstream regions or introns of genes

The idea was that in these regions there would a series of shared motifs, perhaps with one
or two insertions or deletions but between motifs there would be any length of sequence.

The subsquent model was a 3 state model which was log-odd'd ratio to a null model of their
being no examples of a motif in the two sequences.

OPTIONS


-h -help
Show summary of options.

-v -version
Show version of program.

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