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dbifastae - Online in the Cloud

Run dbifastae in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command dbifastae that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


dbifasta - Index a fasta file database

SYNOPSIS


dbifasta -dbname string -idformat list -directory directory -filenames string
-release string -date string -fields list -exclude string -maxindex integer
-sortoptions string -systemsort boolean -cleanup boolean -outfile outfile
-indexoutdir outdir

dbifasta -help

DESCRIPTION


dbifasta is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Utils:Database indexing" command group(s).

OPTIONS


Input section
-dbname string

-idformat list
Default value: idacc

-directory directory
Default value: .

-filenames string
Default value: *.dat

Required section
-release string
Default value: 0.0

-date string
Default value: 00/00/00

Advanced section
-fields list
Default value: acc

-exclude string

-maxindex integer

-sortoptions string
Sort options, typically '-T .' to use current directory for work files and '-k 1,1' to
force GNU sort to use the first field Default value: -T . -k 1,1

-systemsort boolean
Default value: Y

-cleanup boolean
Default value: Y

Output section
-outfile outfile

-indexoutdir outdir
Default value: .

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