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edamisformate - Online in the Cloud

Run edamisformate in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command edamisformate that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


edamisformat - Find EDAM ontology terms by is_format_of relation

SYNOPSIS


edamisformat -identifier string [-namespace list] -sensitive boolean -subclasses boolean
-obsolete boolean -edamisformat outobo

edamisformat -help

DESCRIPTION


edamisformat is a command line program from EMBOSS (“the European Molecular Biology Open
Software Suite”). It is part of the "Ontology:EDAM,Data retrieval:Ontology data" command
group(s).

OPTIONS


Input section
-identifier string

Additional section
-namespace list
By default all terms are returned. Searches can be limited to one or a few namespaces.
Default value: *

Advanced section
-sensitive boolean
By default, the query keywords are matched against the EDAM term names (and synonyms)
only. This option also matches the keywords against the EDAM term definitions and will
therefore (typically) report more matches. Default value: N

-subclasses boolean
Extend the query matches to include all terms which are specialisations (EDAM
sub-classes) of the matched type. Default value: N

-obsolete boolean
The default behaviour is to not use or return obsolete terms. This option if set will
include all terms. Default value: N

Output section
-edamisformat outobo

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