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EDTSurf - Online in the Cloud

Run EDTSurf in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command EDTSurf that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


EDTSurf - quick and accurate construction of macromolecular surfaces

SYNOPSIS


EDTSurf -i pdbname ...

DESCRIPTION


EDTSurf is a open source program to construct triangulated surfaces for macromolecules. It
generates three major macromolecular surfaces: van der Waals surface, solvent-accessible
surface and molecular surface (solvent-excluded surface). EDTsurf also identifies cavities
which are inside of macromolecules.

OPTIONS


-o outname

-t 1-MC 2-VCMC

-s 1-VWS 2-SAS 3-MS 4-SES

-c 1-pure 2-atom 3-chain

-p probe radius [0,2.0]

-f scale factor (0,20.0]

-h 1-in and out 2-out 3-in

output1: outname.ply

output2: outname.asa

output3: outname-cav.pdb

Use EDTSurf online using onworks.net services


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