OnWorks favicon

exonpairs - Online in the Cloud

Run exonpairs in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command exonpairs that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator



exonpairs - SNAP module exonpairs


exonpairs [options] <HMM file> <FASTA file> [options]


-min-intron <int>
minimum Intron length [30]

-max-intron <int>
maximum Intron length [10000]

-einit-length <int>
minimum Einit length in bp [10]

-eterm-length <int>
minimum Eterm length in bp [10]

-exon-length <int>
minimum Exon length in bp [30]

-intron-score <float> minimum Intron score in bits [-5]

-einit-score <float>
minimum Einit score in bits [-5]

-eterm-score <float>
minimum Eterm score in bits [-5]

-exon-score <float>
minimum Exon score in bits [-5]

-pair-score <float>
minimum pair score (exon-intron-exon) [10]

-flank-length <int>
length of flanking sequence per exon [20]

treat lowercase as N

Use exonpairs online using onworks.net services

Free Servers & Workstations

Download Windows & Linux apps

  • 1
    OpenFOAM - The Open Source CFD Toolbox.
    OpenFOAM is a generic, programmable
    software tool for Computational Fluid
    Dynamics (CFD). For more information,
    see: - ...
    Download OpenFOAM
  • 2
    PostInstallerF will install all the
    software that Fedora Linux and others
    doesn't include by default, after
    running Fedora for the first time. Its
    easy for...
    Download PostInstallerF
  • 3
    The strace project has been moved to
    https://strace.io. strace is a
    diagnostic, debugging and instructional
    userspace tracer for Linux. It is used
    to monitor a...
    Download strace
  • 4
    JasperReports Library
    JasperReports Library
    JasperReports Library is the
    world's most popular open source
    business intelligence and reporting
    engine. It is entirely written in Java
    and it is able to ...
    Download JasperReports Library
  • 5
    Numerical Python
    Numerical Python
    NEWS: NumPy 1.11.2 is the last release
    that will be made on sourceforge. Wheels
    for Windows, Mac, and Linux as well as
    archived source distributions can be fou...
    Download Numerical Python
  • 6
    CMU Sphinx
    CMU Sphinx
    CMUSphinx is a speaker-independent large
    vocabulary continuous speech recognizer
    released under BSD style license. It is
    also a collection of open source tools ...
    Download CMU Sphinx
  • 7
    Old Feren OS Repositories
    Old Feren OS Repositories
    This was the Official Repository for
    Feren OS. To add the latest one, run
    this command: (16.04-based) echo
    "deb ...
    Download Old Feren OS Repositories
  • More »

Linux commands