This is the command famap that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
famap - prepare Fasta sequence database for re-PCR searches
SYNOPSIS
famap [-hV] -b mmapped-file [-t cvt] [fafile ...]
famap [-hV] -d mmapped-file [ord ...]
famap [-hV] -l mmapped-file [ord ...]
DESCRIPTION
The program famap is part of the e-PCR suite and is used to build mmapped-file from FASTA
files for reverse e-PCR searches
OPTIONS
where cvt (conversion table) is one of:
off - as is (default)
n - nucleotide [acgtnACGTN] allowed,
N - nucleotide uppercase allowed [ACGTN]
nx - nucleotide with ambiguity codes allowed
NX - nucleotide with ambiguity codes uppercase
EXAMPLE
famap -tN -b genome.famap org/chr_*.fa
fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap
re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200
See famap(1) and re-pcr(1)
Use famap online using onworks.net services
