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famap - Online in the Cloud

Run famap in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command famap that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


famap - prepare Fasta sequence database for re-PCR searches

SYNOPSIS


famap [-hV] -b mmapped-file [-t cvt] [fafile ...]

famap [-hV] -d mmapped-file [ord ...]

famap [-hV] -l mmapped-file [ord ...]

DESCRIPTION


The program famap is part of the e-PCR suite and is used to build mmapped-file from FASTA
files for reverse e-PCR searches

OPTIONS


where cvt (conversion table) is one of:

off - as is (default)

n - nucleotide [acgtnACGTN] allowed,

N - nucleotide uppercase allowed [ACGTN]

nx - nucleotide with ambiguity codes allowed

NX - nucleotide with ambiguity codes uppercase

EXAMPLE


famap -tN -b genome.famap org/chr_*.fa

fahash -b genome.hash -w 12 -f3 ${PWD}/genome.famap

re-PCR -s genome.hash -n1 -g1 ACTATTGATGATGA AGGTAGATGTTTTT 120-200

See famap(1) and re-pcr(1)

Use famap online using onworks.net services


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