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fasta2DB - Online in the Cloud

Run fasta2DB in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command fasta2DB that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fasta2DB - create a Dazzler database from fasta files

SYNOPSIS


fasta2DB [-v] path:db {-ffile | input:fasta ...}

DESCRIPTION


Builds an initial database, or adds to an existing database, the list of .fasta files
following the database name argument, or if the -f option is used, the list of .fasta
files in file. A given .fasta file can only be added once to the DB (this is checked by
the command). The .fasta headers must be in the "Pacbio" format (i.e. the output of the
Pacbio tools or our dextract(1) program) and the well, pulse interval, and read quality
are extracted from the header and kept with each read record. If the files are being
added to an existing database, and the partition settings of the DB have already been set
(see DBsplit(1)), then the partitioning of the database is updated to include the new
data.

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