This is the command fastaq-get_seq_flanking_gaps that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator
PROGRAM:
NAME
fastaq_get_seq_flanking_gaps - Gets the sequences flanking gaps
DESCRIPTION
usage: fastaq_get_seq_flanking_gaps [options] <infile> <outfile>
Gets the sequences flanking gaps
positional arguments:
infile Name of input file
outfile
Name of output file
optional arguments:
-h, --help
show this help message and exit
--left INT
Number of bases to get to left of gap [25]
--right INT
Number of bases to get to right of gap [25]
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