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fastaq-to_fasta - Online in the Cloud

Run fastaq-to_fasta in OnWorks free hosting provider over Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

This is the command fastaq-to_fasta that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fastaq_to_fasta - Converts a variety of input formats to nicely formatted FASTA format

DESCRIPTION


usage: fastaq_to_fasta [options] <infile> <outfile>

Converts a variety of input formats to nicely formatted FASTA format

positional arguments:
infile Name of input file. Can be any of FASTA, FASTQ, GFF3, EMBL, GBK, Phylip

outfile
Name of output file

optional arguments:
-h, --help
show this help message and exit

-l LINE_LENGTH, --line_length LINE_LENGTH
Number of bases on each sequence line of output file. Set to zero for no
linebreaks in sequences [60]

-s, --strip_after_whitespace
Remove everything after first whitespace in every sequence name

-u, --check_unique
Die if any of the output sequence names are not unique

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