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fastaq-trim_contigs - Online in the Cloud

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This is the command fastaq-trim_contigs that can be run in the OnWorks free hosting provider using one of our multiple free online workstations such as Ubuntu Online, Fedora Online, Windows online emulator or MAC OS online emulator

PROGRAM:

NAME


fastaq_trim_contigs - Trims a set number of bases off the end of every contig

DESCRIPTION


usage: fastaq_trim_contigs [options] <infile> <outfile>

Trims a set number of bases off the end of every contig, so gaps get bigger and contig
ends are removed. Bases are replaced with Ns. Any sequence that ends up as all Ns is lost

positional arguments:
infile Name of input file

outfile
Name of output file

optional arguments:
-h, --help
show this help message and exit

--trim_number TRIM_NUMBER
Number of bases to trim around each gap, and off ends of each sequence [100]

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